Finding unique IDs in alignments

Often, we need to know what are the taxa we in our dataset. The simplest command would be:

segul id -i [input-path]

segul will generate the ID in a text file containing a list of the ID in alphabetical order. The file will be saved as id.txt in your current working directory:

sequence_1
sequence_2
sequence_3

To change the file name, pass the name (without the extension) to the --output or -o option. For example:

segul id -i alignments/ -o my_alignment_id